| Fr., 05.03.2004 | KFC Uerdingen - Rot-Weiß Essen | 0:2 |
| Sa., 06.03.2004 | VfR Neumünster - Chemnitzer FC | 1:3 |
| Sa., 06.03.2004 | SG Wattenscheid 09 - Hamburger SV II | 2:3 |
| Sa., 06.03.2004 | SC Preußen Münster - 1. FC Dynamo Dresden | 2:2 |
| Sa., 06.03.2004 | FC St. Pauli - Wuppertaler SV | 1:2 |
| Sa., 06.03.2004 | Eintracht Braunschweig - Holstein Kiel | 1:1 |
| So., 07.03.2004 | FC Sachsen Leipzig - Borussia Dortmund II | 0:1 |
| So., 07.03.2004 | SV Werder Bremen II - SC Paderborn | 3:3 |
| Mo., 08.03.2004 | 1. FC Köln II - FC Schalke 04 II | 1:2 |
| Sp. | S-U-N | Tore | Diff. | P | ||||
|---|---|---|---|---|---|---|---|---|
| 1. |  |  | Wuppertaler SV | 20 | 13-4-3 | 32:18 | 14 | 43 |
| 2. | |  | 1. FC Dynamo Dresden | 21 | 11-7-3 | 30:17 | 13 | 40 |
| 3. |  |  | Borussia Dortmund II | 20 | 11-5-4 | 33:19 | 14 | 38 |
| 4. |  |  | SV Werder Bremen II | 21 | 11-5-5 | 37:24 | 13 | 38 |
| 5. | |  | Rot-Weiß Essen | 20 | 11-3-6 | 38:19 | 19 | 36 |
| 6. | |  | SC Paderborn | 20 | 9-7-4 | 29:24 | 5 | 34 |
| 7. | |  | Chemnitzer FC | 21 | 9-3-9 | 22:27 | -5 | 30 |
| 8. | |  | KFC Uerdingen | 21 | 8-4-9 | 31:29 | 2 | 28 |
| 9. | |  | Eintracht Braunschweig | 21 | 8-4-9 | 27:27 | 0 | 28 |
| 10. | |  | FC St. Pauli | 21 | 7-6-8 | 31:25 | 6 | 27 |
| 11. | |  | Holstein Kiel | 21 | 6-7-8 | 33:39 | -6 | 25 |
| 12. | |  | Hamburger SV II | 21 | 6-7-8 | 21:33 | -12 | 25 |
| 13. | |  | FC Schalke 04 II | 20 | 7-2-11 | 30:40 | -10 | 23 |
| 14. | |  | 1. FC Köln II | 20 | 5-7-8 | 29:35 | -6 | 22 |
| 15. | |  | FC Sachsen Leipzig | 20 | 4-7-9 | 25:31 | -6 | 19 |
| 16. | |  | SC Preußen Münster | 20 | 4-7-9 | 21:29 | -8 | 19 |
| 17. | |  | SG Wattenscheid 09 | 20 | 5-4-11 | 29:42 | -13 | 19 |
| 18. | |  | VfR Neumünster | 20 | 0-9-11 | 18:38 | -20 | 9 |