| Fr., 26.06.2020 | KFC Uerdingen - Chemnitzer FC | 1:1 |
| Sa., 27.06.2020 | FSV Zwickau - Eintracht Braunschweig | 3:2 |
| Sa., 27.06.2020 | SV Waldhof Mannheim - SC Preußen Münster | 0:0 |
| Sa., 27.06.2020 | TSV 1860 München - SpVgg Unterhaching | 3:0 |
| Sa., 27.06.2020 | FC Carl Zeiss Jena - FC Bayern München II | 1:2 |
| Sa., 27.06.2020 | MSV Duisburg - Hallescher FC | 2:2 |
| Sa., 27.06.2020 | 1. FC Kaiserslautern - FC Viktoria Köln | 3:0 |
| Sa., 27.06.2020 | FC Würzburger Kickers - FC Hansa Rostock | 3:1 |
| So., 28.06.2020 | SV Meppen - FC Ingolstadt 04 | 0:2 |
| So., 28.06.2020 | 1. FC Magdeburg - SG Sonnenhof Großaspach | 0:1 |
| Sp. | S-U-N | Tore | Diff. | P | ||||
|---|---|---|---|---|---|---|---|---|
| 1. |  |  | FC Bayern München II | 36 | 19-7-10 | 74:57 | 17 | 64 |
| 2. |  |  | FC Würzburger Kickers | 36 | 19-6-11 | 68:53 | 15 | 63 |
| 3. |  |  | Eintracht Braunschweig | 36 | 17-10-9 | 58:47 | 11 | 61 |
| 4. | |  | FC Ingolstadt 04 | 36 | 16-12-8 | 59:38 | 21 | 60 |
| 5. | |  | MSV Duisburg | 36 | 16-10-10 | 62:46 | 16 | 58 |
| 6. | |  | FC Hansa Rostock | 36 | 16-8-12 | 51:39 | 12 | 56 |
| 7. | |  | TSV 1860 München | 36 | 15-10-11 | 59:50 | 9 | 55 |
| 8. | |  | SV Waldhof Mannheim | 36 | 13-16-7 | 50:44 | 6 | 55 |
| 9. | |  | SV Meppen | 36 | 14-10-12 | 62:54 | 8 | 52 |
| 10. | |  | 1. FC Kaiserslautern | 36 | 13-12-11 | 57:53 | 4 | 51 |
| 11. | |  | SpVgg Unterhaching | 36 | 12-14-10 | 48:47 | 1 | 50 |
| 12. | |  | FC Viktoria Köln | 36 | 13-8-15 | 59:69 | -10 | 47 |
| 13. | |  | KFC Uerdingen | 36 | 12-11-13 | 39:52 | -13 | 47 |
| 14. | |  | Hallescher FC | 36 | 12-8-16 | 61:63 | -2 | 44 |
| 15. | |  | 1. FC Magdeburg | 36 | 9-16-11 | 45:40 | 5 | 43 |
| 16. | |  | Chemnitzer FC | 36 | 10-11-15 | 49:56 | -7 | 41 |
| 17. | |  | FSV Zwickau | 36 | 10-10-16 | 54:60 | -6 | 40 |
| 18. | |  | SC Preußen Münster | 36 | 9-12-15 | 47:57 | -10 | 39 |
| 19. | |  | SG Sonnenhof Großaspach | 36 | 8-8-20 | 31:62 | -31 | 32 |
| 20. | |  | FC Carl Zeiss Jena | 36 | 4-7-25 | 37:83 | -46 | 19 |