| Sa., 16.09.2006 | 1. FC Magdeburg - FC Sachsen Leipzig | 1:1 |
| Sa., 16.09.2006 | Hertha BSC Berlin - 1. FC Dynamo Dresden | 5:1 |
| Sa., 16.09.2006 | FC Energie Cottbus - FC Rot-Weiß Erfurt | 4:1 |
| Sa., 16.09.2006 | Tennis Borussia Berlin - 1. FC Neubrandenburg | 6:3 |
| Sa., 16.09.2006 | Frankfurter FC Viktoria 91 - 1. FC Union Berlin | 0:3 |
| So., 17.09.2006 | Chemnitzer FC - FC Hansa Rostock | 2:1 |
| So., 17.09.2006 | SV Tasmania Gropiusstadt - FC Carl Zeiss Jena | 1:1 |
| Sp. | S-U-N | Tore | Diff. | P | ||||
|---|---|---|---|---|---|---|---|---|
| 1. |  |  | Hertha BSC Berlin | 5 | 5-0-0 | 22:2 | 20 | 15 |
| 2. | |  | 1. FC Neubrandenburg | 5 | 4-0-1 | 12:9 | 3 | 12 |
| 3. |  |  | Tennis Borussia Berlin | 5 | 3-2-0 | 16:8 | 8 | 11 |
| 4. |  |  | 1. FC Dynamo Dresden | 5 | 3-0-2 | 10:8 | 2 | 9 |
| 5. | |  | FC Sachsen Leipzig | 5 | 2-2-1 | 7:6 | 1 | 8 |
| 6. | |  | FC Rot-Weiß Erfurt | 5 | 2-1-2 | 11:10 | 1 | 7 |
| 7. | |  | 1. FC Union Berlin | 5 | 2-1-2 | 12:12 | 0 | 7 |
| 8. | |  | FC Carl Zeiss Jena | 5 | 1-3-1 | 6:6 | 0 | 6 |
| 9. | |  | FC Energie Cottbus | 5 | 2-0-3 | 7:8 | -1 | 6 |
| 10. | |  | FC Hansa Rostock | 5 | 1-2-2 | 13:8 | 5 | 5 |
| 11. | | | SV Tasmania Gropiusstadt | 5 | 1-2-2 | 7:14 | -7 | 5 |
| 12. | |  | Chemnitzer FC | 5 | 1-1-3 | 3:10 | -7 | 4 |
| 13. | |  | 1. FC Magdeburg | 5 | 0-2-3 | 3:8 | -5 | 2 |
| 14. | |  | Frankfurter FC Viktoria 91 | 5 | 0-0-5 | 2:22 | -20 | 0 |