| Sa., 01.11.2008 | Hertha BSC Berlin II - Chemnitzer FC | 1:2 |
| Sa., 01.11.2008 | FC Hansa Rostock II - SV Babelsberg 03 | 1:1 |
| Sa., 01.11.2008 | Hamburger SV II - Hannover 96 II | 0:3 |
| Sa., 01.11.2008 | Hallescher FC - Holstein Kiel | 1:1 |
| Sa., 01.11.2008 | VfB Lübeck - FC Energie Cottbus II | 0:0 |
| So., 02.11.2008 | SV Wilhelmshaven - 1. FC Magdeburg | 2:2 |
| So., 02.11.2008 | FC Sachsen Leipzig - Altonaer FC 93 | 1:3 |
| So., 02.11.2008 | VFC Plauen - Türkiyemspor Berlin | 2:0 |
| So., 02.11.2008 | VfL Wolfsburg II - FC Oberneuland 1948 | 4:0 |
| Sp. | S-U-N | Tore | Diff. | P | ||||
|---|---|---|---|---|---|---|---|---|
| 1. |  |  | SV Babelsberg 03 | 11 | 7-4-0 | 14:4 | 10 | 25 |
| 2. | |  | Holstein Kiel | 11 | 7-2-2 | 18:10 | 8 | 23 |
| 3. | |  | Hallescher FC | 11 | 5-6-0 | 12:7 | 5 | 21 |
| 4. | |  | 1. FC Magdeburg | 11 | 6-2-3 | 14:8 | 6 | 20 |
| 5. | |  | SV Wilhelmshaven | 11 | 5-5-1 | 18:13 | 5 | 20 |
| 6. |  |  | VfL Wolfsburg II | 11 | 5-2-4 | 18:11 | 7 | 17 |
| 7. | |  | VFC Plauen | 11 | 4-5-2 | 18:12 | 6 | 17 |
| 8. |  |  | FC Oberneuland 1948 | 11 | 5-2-4 | 11:12 | -1 | 17 |
| 9. | |  | Altonaer FC 93 | 11 | 5-1-5 | 20:20 | 0 | 16 |
| 10. | |  | Hamburger SV II | 11 | 4-3-4 | 14:12 | 2 | 15 |
| 11. | |  | Hannover 96 II | 11 | 4-2-5 | 15:14 | 1 | 14 |
| 12. | |  | FC Hansa Rostock II | 11 | 4-2-5 | 16:21 | -5 | 14 |
| 13. | |  | Chemnitzer FC | 11 | 3-3-5 | 16:15 | 1 | 12 |
| 14. | |  | VfB Lübeck | 11 | 2-4-5 | 12:15 | -3 | 10 |
| 15. | |  | FC Sachsen Leipzig | 11 | 2-4-5 | 6:13 | -7 | 10 |
| 16. | |  | Hertha BSC Berlin II | 11 | 3-1-7 | 9:22 | -13 | 10 |
| 17. | |  | Türkiyemspor Berlin | 11 | 2-2-7 | 9:18 | -9 | 8 |
| 18. | |  | FC Energie Cottbus II | 11 | 0-2-9 | 6:19 | -13 | 2 |