| Fr., 14.11.2008 | 1. FC Magdeburg - FC Energie Cottbus II | 3:1 |
| Sa., 15.11.2008 | FC Hansa Rostock II - Hallescher FC | 0:1 |
| Sa., 15.11.2008 | SV Wilhelmshaven - Altonaer FC 93 | 4:1 |
| Sa., 15.11.2008 | VfB Lübeck - Türkiyemspor Berlin | 3:0 |
| So., 16.11.2008 | VFC Plauen - Chemnitzer FC | 0:4 |
| So., 16.11.2008 | Hamburger SV II - SV Babelsberg 03 | 0:0 |
| So., 16.11.2008 | FC Sachsen Leipzig - FC Oberneuland 1948 | 0:3 |
| So., 16.11.2008 | VfL Wolfsburg II - Hannover 96 II | 1:0 |
| So., 16.11.2008 | Hertha BSC Berlin II - Holstein Kiel | 1:1 |
| Sp. | S-U-N | Tore | Diff. | P | ||||
|---|---|---|---|---|---|---|---|---|
| 1. |  |  | Holstein Kiel | 13 | 8-3-2 | 21:12 | 9 | 27 |
| 2. | |  | SV Babelsberg 03 | 12 | 7-5-0 | 14:4 | 10 | 26 |
| 3. | |  | 1. FC Magdeburg | 13 | 8-2-3 | 19:10 | 9 | 26 |
| 4. | |  | Hallescher FC | 12 | 6-6-0 | 13:7 | 6 | 24 |
| 5. |  |  | SV Wilhelmshaven | 13 | 6-5-2 | 22:15 | 7 | 23 |
| 6. | |  | VfL Wolfsburg II | 13 | 6-3-4 | 20:12 | 8 | 21 |
| 7. |  |  | VFC Plauen | 13 | 5-5-3 | 20:17 | 3 | 20 |
| 8. | |  | FC Oberneuland 1948 | 13 | 6-2-5 | 15:14 | 1 | 20 |
| 9. | |  | Hannover 96 II | 13 | 5-2-6 | 19:17 | 2 | 17 |
| 10. | |  | Altonaer FC 93 | 13 | 5-2-6 | 21:24 | -3 | 17 |
| 11. | |  | Chemnitzer FC | 13 | 4-4-5 | 21:16 | 5 | 16 |
| 12. | |  | Hamburger SV II | 13 | 4-4-5 | 15:14 | 1 | 16 |
| 13. | |  | VfB Lübeck | 13 | 3-5-5 | 15:15 | 0 | 14 |
| 14. | |  | FC Hansa Rostock II | 13 | 4-2-7 | 17:24 | -7 | 14 |
| 15. | |  | Türkiyemspor Berlin | 13 | 3-2-8 | 11:21 | -10 | 11 |
| 16. | |  | Hertha BSC Berlin II | 13 | 3-2-8 | 12:27 | -15 | 11 |
| 17. | |  | FC Sachsen Leipzig | 13 | 2-4-7 | 6:18 | -12 | 10 |
| 18. | |  | FC Energie Cottbus II | 13 | 1-2-10 | 8:22 | -14 | 5 |