| Fr., 28.11.2003 | FC St. Pauli - SG Wattenscheid 09 | 2:2 |
| Fr., 28.11.2003 | Holstein Kiel - SV Werder Bremen II | 1:3 |
| Fr., 28.11.2003 | 1. FC Dynamo Dresden - Eintracht Braunschweig | 1:0 |
| Sa., 29.11.2003 | Chemnitzer FC - FC Sachsen Leipzig | 1:1 |
| Sa., 29.11.2003 | Rot-Weiß Essen - 1. FC Köln II | 0:0 |
| Sa., 29.11.2003 | SC Paderborn - Borussia Dortmund II | 1:3 |
| Sa., 29.11.2003 | Wuppertaler SV - KFC Uerdingen | 3:1 |
| So., 30.11.2003 | Hamburger SV II - VfR Neumünster | 2:2 |
| Sa., 21.02.2004 | FC Schalke 04 II - SC Preußen Münster | 0:2 |
| Sp. | S-U-N | Tore | Diff. | P | ||||
|---|---|---|---|---|---|---|---|---|
| 1. |  |  | Wuppertaler SV | 18 | 11-4-3 | 29:17 | 12 | 37 |
| 2. |  |  | SV Werder Bremen II | 18 | 10-4-4 | 31:19 | 12 | 34 |
| 3. |  |  | Rot-Weiß Essen | 18 | 10-3-5 | 36:17 | 19 | 33 |
| 4. | |  | 1. FC Dynamo Dresden | 18 | 9-6-3 | 26:15 | 11 | 33 |
| 5. | |  | Borussia Dortmund II | 18 | 9-5-4 | 27:19 | 8 | 32 |
| 6. | |  | SC Paderborn | 18 | 9-5-4 | 26:21 | 5 | 32 |
| 7. | |  | FC St. Pauli | 18 | 7-6-5 | 30:20 | 10 | 27 |
| 8. | |  | Eintracht Braunschweig | 18 | 8-3-7 | 26:24 | 2 | 27 |
| 9. | |  | KFC Uerdingen | 18 | 7-4-7 | 28:26 | 2 | 25 |
| 10. | |  | 1. FC Köln II | 18 | 5-7-6 | 27:31 | -4 | 22 |
| 11. | |  | Holstein Kiel | 18 | 5-6-7 | 30:34 | -4 | 21 |
| 12. | |  | Chemnitzer FC | 18 | 6-3-9 | 15:24 | -9 | 21 |
| 13. | |  | FC Schalke 04 II | 17 | 6-2-9 | 28:32 | -4 | 20 |
| 14. | |  | SG Wattenscheid 09 | 18 | 5-4-9 | 27:38 | -11 | 19 |
| 15. | |  | FC Sachsen Leipzig | 18 | 4-6-8 | 25:30 | -5 | 18 |
| 16. | |  | Hamburger SV II | 18 | 3-7-8 | 16:31 | -15 | 16 |
| 17. | |  | SC Preußen Münster | 17 | 2-6-9 | 15:27 | -12 | 12 |
| 18. | |  | VfR Neumünster | 18 | 0-9-9 | 16:33 | -17 | 9 |